echo 'Removing all files in current directory...'

alias rm rm
rm -r *

echo 'Copying the source files...'

cp -p $SURFHOME/READ.ME.FIRST .

cp -p $SURFHOME/README.2.9 .

cp -p  $SURFHOME/SNAIL-MAIL .

cp -p  $SURFHOME/URL .

cp -pr $SURFHOME/anatomy .

mkdir bin
chmod 755 bin
mkdir bin/debug
chmod 755 bin/debug
mkdir bin/garnet-fixes
chmod 755 bin/garnet-fixes
mkdir bin/cmucl-fixes
chmod 755 bin/cmucl-fixes
mkdir bin/gui
chmod 755 bin/gui
mkdir bin/hippocampus
chmod 755 bin/hippocampus
mkdir bin/parameters
chmod 755 bin/parameters
mkdir bin/rabbit
chmod 755 bin/rabbit
mkdir bin/roylance-clmath
chmod 755 bin/roylance-clmath
mkdir bin/sys
chmod 755 bin/sys



mkdir cells
chmod 755 cells
cp -p  $SURFHOME/cells/README cells/

mkdir circuits
chmod 755 circuits
cp -p  $SURFHOME/circuits/README circuits/

cp -pr $SURFHOME/cmucl .

cp -p  $SURFHOME/customs.lisp .

mkdir data
chmod 755 data

mkdir doc
chmod 755 doc
# cp -p  $SURFHOME/doc/* doc
cp -p $SURFHOME/doc/DOC.READ.ME.FIRST doc/
cp -p $SURFHOME/doc/*.doc doc/
cp -p $SURFHOME/doc/*.ps.Z doc/
cp -p $SURFHOME/doc/*.ps.gz doc/

# mkdir doc/outside_docs
chmod 755 doc/outside_docs
cp -pr $SURFHOME/doc/outside_docs doc/
# cp -pr $SURFHOME/doc/html doc/html
# mkdir doc/old-doc-files
chmod 755 doc/old-doc-files
cp -pr $SURFHOME/doc/old-doc-files doc/
# mkdir doc/window-help
chmod 755 doc/window-help
cp -pr $SURFHOME/doc/window-help doc/


cp -pr $SURFHOME/ilisp .

cp -pr $SURFHOME/lib .

mkdir $SURFHOME/lisp_dumps .
chmod 755 $SURFHOME/lisp_dumps .

cp -pr $SURFHOME/loaders .
cd loaders
rm *.sparcf
rm *.fasl
cd ..


mkdir $SURFHOME/logs .
chmod 755 $SURFHOME/logs .

# cp -pr $SURFHOME/misc .

mkdir misc
chmod 755 misc
cp -p  $SURFHOME/misc/.neurolucida.notes misc/
cp -p  $SURFHOME/misc/.bashrc-stuff misc/
cp -p  $SURFHOME/misc/.cshrc-stuff misc/
cp -p  $SURFHOME/misc/.startxemacs.el misc/
cp -p  $SURFHOME/misc/changes-2.8.doc misc/
cp -p  $SURFHOME/misc/cp-source misc/
cp -p  $SURFHOME/misc/tr1161.currents.lisp misc/



mkdir $SURFHOME/notes .
chmod 755 $SURFHOME/notes .

cp -pr $SURFHOME/ntscable .

mkdir plot
chmod 755 plot

mkdir scripts 
chmod 755 scripts 
cp -p  $SURFHOME/scripts/README scripts/
cp -pr  $SURFHOME/scripts/demos scripts/

mkdir src
chmod 755 src

mkdir src/debug
chmod 755 src/debug
cp -p  $SURFHOME/src/debug/*.lisp  src/debug
mkdir src/garnet-fixes
chmod 755 src/garnet-fixes
cp -p  $SURFHOME/src/garnet-fixes/*.lisp src/garnet-fixes
mkdir src/cmucl-fixes
chmod 755 src/cmucl-fixes
cp -p  $SURFHOME/src/cmucl-fixes/*.lisp src/cmucl-fixes
mkdir src/gui
chmod 755 src/gui
cp -p  $SURFHOME/src/gui/*.lisp  src/gui
mkdir src/hippocampus
chmod 755 src/hippocampus
cp -p  $SURFHOME/src/hippocampus/*.lisp src/hippocampus
mkdir src/parameters
chmod 755 src/parameters
cp -p  $SURFHOME/src/parameters/*.lisp  src/parameters
mkdir src/rabbit
chmod 755 src/rabbit
cp -p  $SURFHOME/src/rabbit/*.lisp  src/rabbit
mkdir src/roylance-clmath
chmod 755 src/roylance-clmath
cp -p  $SURFHOME/src/roylance-clmath/*.lisp src/roylance-clmath
cp -p  $SURFHOME/src/roylance-clmath/README src/roylance-clmath
mkdir src/sys
chmod 755 src/sys
cp -p  $SURFHOME/src/sys/*.lisp  src/sys


cp -p  $SURFHOME/surf-hippo .




echo 'Removing ~ files...'


find . \( -name '.*~' \) -exec rm {} \;
find . \( -name '.*#' \) -exec rm {} \;
find . \( -name '*~' \) -exec rm {} \;
find . \( -name '*#' \) -exec rm {} \;

alias rm rm -i


